Use the full path for bcl2fastq (ccc75e27) · Commits · research-computing-public / quake-bufferbox-workflow

bbox-workflow-miseq

+1 −1

Original line number	Diff line number	Diff line
		@@ -38,7 +38,7 @@ my $TIMEOUT1 = 7200;

		# $RUNCOMMAND is the command we will run.
		my @RUNCOMMAND = (qw(
		bcl2fastq -l WARNING -o Data/Intensities/BaseCalls -p 9 -d 2 --no-lane-splitting
		/usr/local/bin/bcl2fastq -l WARNING -o Data/Intensities/BaseCalls -p 9 -d 2 --no-lane-splitting
		));

		# Next, let's make a big list of global variables. These all initially start