Loading bbox-workflow-nextseq +14 −5 Original line number Diff line number Diff line Loading @@ -699,7 +699,8 @@ EOF # Actually spawn the search command. my $search_inhandle; my $results_handle = gensym(); my $search_buffer = ''; my $search_buffer; my $search_output = ''; my $search_pid; eval { $search_pid = open3($search_inhandle, $results_handle, $results_handle, Loading @@ -717,20 +718,28 @@ EOF close($search_inhandle); # Pull output into the buffer, and then clean up. while (read($results_handle, $drive_buffer, 10)) { 1; while (read($results_handle, $search_buffer, 10)) { $search_output .= $search_buffer; } dolog($search_buffer); waitpid($search_pid, 0); my $drive_search_exit_code = $? >> 8; dolog($search_output); close($results_handle); # Make sure we have something in the buffer if (!defined($search_output) or !$search_output) { dolog(<<"EOF"); Problem! EOF return undef; } # Get the file UID with a fun compound split: # First, split the search buffer into multiple lines. # Grab the second line. # Next, split the retrieved line into space-separated fields. # The first field is our UID. my $file_uid = (split(/\s+/, (split(/\n/, $search_buffer))[1]))[0]; my ($file_uid, $file_name) = (split(/\s+/, (split(/\n/, $search_output))[1]))[0,1]; if (!defined($file_uid) or !$file_uid) { dolog(<<"EOF"); We could not find a matching sample sheet for this library ID. Loading Loading
bbox-workflow-nextseq +14 −5 Original line number Diff line number Diff line Loading @@ -699,7 +699,8 @@ EOF # Actually spawn the search command. my $search_inhandle; my $results_handle = gensym(); my $search_buffer = ''; my $search_buffer; my $search_output = ''; my $search_pid; eval { $search_pid = open3($search_inhandle, $results_handle, $results_handle, Loading @@ -717,20 +718,28 @@ EOF close($search_inhandle); # Pull output into the buffer, and then clean up. while (read($results_handle, $drive_buffer, 10)) { 1; while (read($results_handle, $search_buffer, 10)) { $search_output .= $search_buffer; } dolog($search_buffer); waitpid($search_pid, 0); my $drive_search_exit_code = $? >> 8; dolog($search_output); close($results_handle); # Make sure we have something in the buffer if (!defined($search_output) or !$search_output) { dolog(<<"EOF"); Problem! EOF return undef; } # Get the file UID with a fun compound split: # First, split the search buffer into multiple lines. # Grab the second line. # Next, split the retrieved line into space-separated fields. # The first field is our UID. my $file_uid = (split(/\s+/, (split(/\n/, $search_buffer))[1]))[0]; my ($file_uid, $file_name) = (split(/\s+/, (split(/\n/, $search_output))[1]))[0,1]; if (!defined($file_uid) or !$file_uid) { dolog(<<"EOF"); We could not find a matching sample sheet for this library ID. Loading